John F. Allen

Publications

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• Allen JF, Missirlis F (2012) Queen Mary: nobody expects the Spanish Inquisition. Lancet 379 (9828): 1785.

• de Paula WBM, Allen JF, van der Giezen M (2012) Mitochondria, hydrogenosomes and mitosomes in relation to the CoRR hypothesis for genome function and evolution. In: Bullerwell CE (ed) Organelle Genetics. Springer, Berlin and Heidelberg, pp. 105-119.

• Pesole G, Allen JF, Lane N, Martin W, Rand DM, Schatz G, Saccone C (2012) The neglected genome. EMBO Reports Advance online publication. doi:10.1038/embor.2012.57

• Prihoda J, Tanaka A, de Paula WBM, Allen JF, Tirichine L, Bowler C (2012) Chloroplast-mitochondria cross-talk in diatoms. Journal of Experimental Botany 63 (4): 1543-1557.

• Puthiyaveetil S, Ibrahim IM, Allen JF (2012) Oxidation–reduction signalling components in regulatory pathways of state transitions and photosystem stoichiometry adjustment in chloroplasts. Plant Cell and Environment 35: 347–359.

• Allen JF, de Paula WBM, Puthiyaveetil S, Nield J (2011) A structural phylogenetic map for chloroplast photosynthesis. Trends in Plant Science 16 (12): 645-655 | Supplemental Data

• Allen JF, Santabarbara S, Allen CA, Puthiyaveetil S (2011) Discrete redox signaling pathways regulate photosynthetic light-harvesting and chloroplast gene transcription. PLoS ONE 6 (10): e26372.

• McInerney JO, Martin WF, Koonin EV, Allen JF, Galperin MY, Lane N, Archibald JM, Embley TM (2011) Planctomycetes and eukaryotes: a case of analogy not homology. Bioessays 33: 810-817.

• Allen JF (2010) Redox homeostasis in the emergence of life. On the constant internal environment of nascent living cells. Journal of Cosmology 10: 3362-3373.

• Allen JF (2010) Research and how to promote it in a university. Future Medicinal Chemistry 2: 15-20.

• Allen JF, Vermaas WFJ (2010) Evolution of photosynthesis. In: Encyclopedia of Life Sciences (ELS). John Wiley & Sons Ltd, Chichester. http://www.els.net/ [DOI: 10.1002/9780470015902.a0002034.pub2].

• Lane N, Allen JF, Martin W (2010) How did LUCA make a living? Chemiosmosis in the origin of life. Bioessays 32: 271-280.

• Puthiyaveetil S, Ibrahim IM, Jeličić B, Tomašić A, Fulgosi H, Allen JF (2010) Transcriptional control of photosynthesis genes: the evolutionarily conserved regulatory mechanism in plastid genome function. Genome Biology and Evolution 2: 888-896. | Supplementary material.

• Allen JF, Mullineaux C (eds) (2009) State transitions. Photosynthesis Research 99: 155-255.

• Jurić S, Hazler-Pilepić K, Tomašić A, Lepeduš H, Jeličić B, Puthiyaveetil S, Bionda T, Vojta L, Allen JF, Schleiff E, Fulgosi H (2009) Tethering of ferredoxin:NADP⁺ oxidoreductase to thylakoid membranes is mediated by novel chloroplast protein TROL. The Plant Journal 60: 783-794.

• Puthiyaveetil S, Allen JF (2009) Chloroplast two-component systems: evolution of the link between photosynthesis and gene expression. Proceedings of the Royal Society B-Biological Sciences 276: 2133-2145.

• Allen CA, Allen JF (2008) Redox effects on chloroplast protein synthesis and phosphorylation. In: Allen JF, Gantt E, Golbeck JH, Osmond B (eds) Photosynthesis. Energy from the Sun. Proceedings of the 14th International Congress on Photosynthesis. Springer, Heidelberg, pp. 903–907.

• Allen JF, Allen CA, Puthiyaveetil S (2008) Redox switches and evolutionary transitions. In: Allen JF, Gantt E, Golbeck JH, Osmond B (eds) Photosynthesis. Energy from the Sun. Proceedings of the 14th International Congress on Photosynthesis. Springer, Heidelberg, p. 1155–1160.

• Allen JF, Gantt E, Golbeck JH, Osmond B (2008) Photosynthesis. Energy from the Sun. Proceedings of the 14th International Congress on Photosynthesis. Springer, Heidelberg.

• Allen JF, Puthiyaveetil S (2008) Chloroplast sensor kinase - The redox messenger of organelle gene expression. Biochimica et Biophysica Acta-Bioenergetics 1777: S108.

• Deusch O, Landan G, Roettger M, Gruenheit N, Kowallik KV, Allen JF, Martin W, Dagan T (2008) Genes of cyanobacterial origin in plant nuclear genomes point to a heterocyst-forming plastid ancestor. Molecular Biology and Evolution 25: 748-761.

• Kirchhoff H, Haferkamp S, Allen JF, Epstein DBA, Mullineaux CW (2008) Protein diffusion and macromolecular crowding in thylakoid membranes. Plant Physiology 146: 1571-1578.

• Puthiyaveetil S, Allen JF (2008) Transients in chloroplast gene transcription. Biochemical and Biophysical Research Communications 368: 871-874.

• Puthiyaveetil S, Allen JF (2008) A bacterial-type sensor kinase couples electron transport to gene expression in chloroplasts. In: Allen JF, Gantt E, Golbeck JH, Osmond B (eds) Photosynthesis. Energy from the Sun. Proceedings of the 14th International Congress on Photosynthesis. Springer, Heidelberg, pp. 1181–1186.

• Puthiyaveetil S, Kavanagh TA, Cain P, Sullivan JA, Newell CA, Gray JC, Robinson C, van der Giezen M, Rogers MB, Allen JF (2008) The ancestral symbiont sensor kinase CSK links photosynthesis with gene expression in chloroplasts. Proceedings of the National Academy of Sciences of the United States of America 105: 10061-10066. | Supporting information.

• Russell MJ, Allen JF, Milner-White EJ (2008) Inorganic complexes enabled the onset of life and oxygenic photosynthesis. In: Allen JF, Gantt E, Golbeck JH, Osmond B (eds) Photosynthesis. Energy from the Sun. Proceedings of the 14th International Congress on Photosynthesis. Springer, Heidelberg, pp. 1187–1192.

• Allen JF, Martin W (2007) Evolutionary biology - Out of thin air. Nature 445: 610-612.

• Allen CA, van der Giezen M, Allen JF (2007) Origin, function and transmission of mitochondria. In: Martin W, Müller M (eds) Origins of Mitochondria and Hydrogenosomes. Springer-Verlag, Berlin Heidelberg, pp 39-56.

• Puthiyaveetil S, Allen J (2007) A bacterial-type sensor kinase couples electron transport to gene expression in chloroplasts. Photosynthesis Research 91: 269-269.

• Russell M, Allen J, Milner-White E (2007) Inorganic complexes in the onset of life and oxygenic photosynthesis. Photosynthesis Research 91: 269-269.

• Allen JF (2006) Plastoquinone redox control of chloroplast thylakoid protein phosphorylation and distribution of excitation energy between photosystems: discovery, background, implications. In: Govindjee, Beatty JT, Gest H, Allen JF (eds) Discoveries in photosynthesis. Springer, Dordrecht, pp 177-186.

• Ferris JP, Matthews CN, Schwartzman DW, Allen JF, Wachtershauser G (2006) From volcanic origins of chemoautotrophic life to Bacteria, Archaea and Eukarya - Discussion. Philosophical Transactions of the Royal Society B-Biological Sciences 361: 1806-1808.

• Gest H, Beatty JT, Allen JF, Govindjee (2006) Preface. In: Govindjee, Beatty JT, Gest H, Allen JF (eds) Discoveries in photosynthesis. Springer, Dordrecht, pp xxiii-xxvi.

• Govindjee, Beatty JT, Gest H, Allen JF (2006) Discoveries in photosynthesis. In: Govindjee (ed) Advances in photosynthesis and respiration. Springer, Dordrecht, pp 1,292.

• Govindjee, Beatty JT, Allen JF (2006) Celebrating the millennium – historical highlights of photosynthesis research, Part 3. In: Govindjee, Beatty JT, Gest H, Allen JF (eds) Discoveries in photosynthesis. Springer, Dordrecht, pp 23-35.

• Allen JF, Puthiyaveetil S, Strom J, Allen CA (2005) Energy transduction anchors genes in organelles. Bioessays 27: 426-435.

• Allen JF (2005) Photosynthesis: The processing of redox signals in chloroplasts. Current Biology 15: R929-R932.

• Allen JF (2005) Power, sex, suicide: Mitochondria and the meaning of life. Nature 437: 1235-1236.

• Allen JF (2005) A redox switch hypothesis for the origin of two light reactions in photosynthesis. Febs Letters 579: 963-968.

• Allen JF, Puthiyaveetil S (2005) Choroflexus aurantiacus and the origin of oxygenic, two-light reaction photosynthesis in failure to switch between type I and type II reaction centres. In: Est Avd, Bruce D (eds) Photosynthesis: Fundamental Aspects to Global Perspectives. Alliance Communications Group, Lawrence, Kansas, pp 753-756.

• Årsköld SP, Ström J, Allen JF, Krausz E (2005) Low-Temperature Absorption and Magnetic Circular Dichroism of the Four Haems of the Cytochrome b6f Complex. In: Est Avd, Bruce D (eds) Photosynthesis: Fundamental Aspects to Global Perspectives. Alliance Communications Group, Lawrence, Kansas, pp 455-457.

• Ström J, Forsberg J, Puthiyaveetil S, Allen JF (2005) Cytochrome b6 in redox regulation of photosynthesis and chloroplast gene expression. In: Est Avd, Bruce D (eds) Photosynthesis: Fundamental Aspects to Global Perspectives. Alliance Communications Group, Lawrence, Kansas, pp 436-438.

• Allen JF (2004) Cytochrome b(6)f: structure for signalling and vectorial metabolism. Trends in Plant Science 9: 130-137.

• Allen JF (2004) Chloroplast-Redox Poise and Signaling. In: Lennarz WJ, Lane MD (eds) Encyclopedia of Biological Chemistry. Elsevier, San Diego, pp 438-445.

• Allen JF, Mullineaux CW (2004) Probing the mechanism of state transitions in oxygenic photosynthesis by chlorophyll fluorescence spectroscopy, kinetics and imaging. In: Papageorgiou G, Govindjee (eds) Chlorophyll fluorescence – a signature of photosynthesis. Springer, Dordrecht, pp 447-461.

• Govindjee, Allen JF, Beatty JT (2004) Celebrating the millennium: historical highlights of photosynthesis research, part 3. Photosynthesis Research 80: 1-13.

• Allen JF, Raven JA (2003) Chloroplasts and mitochondria: functional genomics and evolution - Papers of Discussion Meetings organized and edited by J. F. Allen and J. A. Raven - Meetings held at The Royal Society on 26 and 27 June 2002 and at the Novartis Foundation on 28 June 2002 - Introduction. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 358: 3-4.

• Allen JF, Gray JC, Horner DS, Howe CJ, Lopez-Juez E, Herrmann RG, Leaver CJ (2003) Coordination of plastid and nuclear gene expression - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 358: 144-145.

• Allen JF (2003) Cyclic, pseudocyclic and noncyclic photophosphorylation: new links in the chain. Trends in Plant Science 8: 15-19.

• Allen JF (2003) The function of genomes in bioenergetic organelles. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 358: 19-37.

• Allen JF, Raven JA, Douglas AE, Cavalier-Smith T, Blankenship RE, Lopez-Juez E, Bauer CE, Russell MJ, Martin W, Nisbet E, Doolittle WF, Embley TM, Whatley FR, Tovar J (2003) General discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 358: 217-222.

• Allen JF (2003) State transitions - a question of balance. Science 299: 1530-1532.

• Allen JF (2003) Superoxide as an obligatory, catalytic intermediate in photosynthetic reduction of oxygen by adrenaline and dopamine. Antioxidants & Redox Signaling 5: 7-14.

• Allen JF (2003) Why chloroplasts and mitochondria contain genomes. Comparative and Functional Genomics 4: 31-36.

• Blankenship RE, Bauer CE, Allen JF, Martin W (2003) Redox and light regulation of gene expression in photosynthetic prokaryotes - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 358: 153-154.

• Foyer CH, Allen JF (2003) Lessons from redox signaling in plants. Antioxidants & Redox Signaling 5: 3-5.

• Fray R, Howe CJ, Leaver CJ, Walker JE, Gray JC, Douglas AE, Cavalier-Smith T, Allen JF, Blankenship RE (2003) Evolution of the chloroplast genome - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 358: 106-107.

• Gray JC, Wilson RJM, Raven JA, Martin W, Cavalier-Smith T, Allen JF, Tovar J (2003) Parasite plastids: maintenance and functions - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 358: 162-164.

• Horner DS, Tielens AGM, Martin W, Cavalier-Smith T, Allen JF, Ferguson S, Tovar J (2003) Biochemical and evolutionary aspects of anaerobically functioning mitochondria - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 358: 213-215.

• Horner DS, Allen JF, Cavalier-Smith T, Willison K, Leaver CJ, Martin W (2003) The function of genomes in bioenergetic organelles - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 358: 37-38.

• Horner D, Douglas AE, Raven JA, Cavalier-Smith T, Martin W, Herrmann RG, Allen JF (2003) Genomes at the interface between bacteria and organelles - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 358: 17-18.

• Raven JA, Allen JF (2003) Genomics and chloroplast evolution: what did cyanobacteria do for plants? Genome Biology 4:209.

• Tielens AGM, Herrmann RG, Allen JF (2003) Eukaryotic genome evolution: rearrangement and coevolution of compartmentalized genetic information - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 358: 97-97.

• Tielens AGM, Embley TM, Martin W, Tovar J, Douglas AE, Cavalier-Smith T, Barbrook A, Allen JF, Horner DS, Lane N (2003) Mitochondria and hydrogenosomes are two forms of the same fundamental organelle - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 358: 202-203.

• van der Giezen M, Cavalier-Smith T, Martin W, Wilkins A, Doolittle WF, Allen JF, Leaver CJ, Whatley FR, Howe CJ (2003) Genomic reduction and evolution of novel genetic membranes and protein-targeting machinery in eukaryote-eukaryote chimaeras (meta-algae) - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 358: 133-134.

• Whatley FR, Andersson SGE, van der Giezen M, Martin W, Tielens AGM, Allen JF (2003) On the origin of mitochondria: a genomics perspective - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 358: 177-179.

• Allen JF (2002) Photosynthesis - telling it like it is. Trends in Plant Science 7: 291-292.

• Allen JF (2002) Photosynthesis for ramblers and browsers. Trends in Plant Science 7: 376-377.

• Allen JF (2002) Photosynthesis of ATP - Electrons, proton pumps, rotors, and poise. Cell 110: 273-276.

• Allen JF (2002) Plastoquinone redox control of chloroplast thylakoid protein phosphorylation and distribution of excitation energy between photosystems: discovery, background, implications. Photosynthesis Research 73: 139-148.

• Allen JF, Race HL (2002) Will the Real LHC II Kinase Please Step Forward? Science's STKE: http://www.stke.org/cgi/content/full/sigtrans;2002/155/pe43.

• Allen JF, Forsberg J (2001) The balancing act: redox poise and signalling. In: XIIth International Congress on Photosynthesis. CSIRO Publishing, Melbourne, p PL4.

• Allen JF (2001) Bioinformatics and discovery: induction beckons again. Bioessays 23: 104-107.

• Allen JF (2001) Comment on the editorial 'Back to Darwin?' in EMBO reports, November 2000. EMBO Reports 2: 76.

• Allen JF (2001) Hypothesis, induction and background knowledge. Data do not speak for themselves. Replies to Donald A Gillies, Lawrence A Kelley and Michael Scott. Bioessays 23: 861-862.

• Allen JF (2001) In silico veritas - Data-mining and automated discovery: the truth is in there. EMBO Reports 2: 542-544.

• Allen JF, Forsberg J (2001) Molecular recognition in thylakoid structure and function. Trends in Plant Science 6: 317-326.

• Forsberg J, Allen JF (2001) Protein tyrosine phosphorylation in the transition to light state 2 of chloroplast thylakoids. Photosynthesis Research 68: 71-79.

• Forsberg J, Rosenquist M, Fraysse L, Allen JF (2001) Redox signalling in chloroplasts and mitochondria: genomic and biochemical evidence for two-component regulatory systems in bioenergetic organelles. Biochemical Society Transactions 29: 403-407.

• Pfannschmidt T, Allen JF, Oelmuller R (2001) Principles of redox control in photosynthesis gene expression. Physiologia Plantarum 112: 1-9.

• Allen JF, Pfannschmidt T (2000) Balancing the two photosystems: photosynthetic electron transfer governs transcription of reaction centre genes in chloroplasts. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 355: 1351-1357.

• Hideg E, Barber J, Heber U, Asada K, Allen JF (2000) Supermolecular structure of photosystem II and location of the PsbS protein - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 355: 1343-1344.

• Laisk A, Allen JF, Osmond B, Foyer CH, Garcia-Mendoza E (2000) Balancing the two photosystems: photosynthetic electron transfer governs transcription of reaction centre genes in chloroplasts - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 355: 1357-1359.

• Laisk A, Badger MR, Allen JF, Matthijs HCP, Griffiths H (2000) Electron flow to oxygen in higher plants and algae: rates and control of direct photoreduction (Mehler reaction) and rubisco oxygenase - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 355: 1445-1446.

• Struglics A, Fredlund KM, Konstantinov YM, Allen JF, Møller IM (2000) Protein phosphorylation/dephosphorylation in the inner membrane of potato tuber mitochondria. Febs Letters 475: 213-217.

• Tullberg A, Alexciev A, Pfannschmidt T, Allen JF (2000) Photosynthetic electron flow regulates transcription of the psaB gene in pea (Pisum sativum L.) chloroplasts through the redox state of the plastoquinone pool. Plant Cell Physiol. 41: 1045-1054.

• Allen JF, Allen CA (1999) A mitochondrial model for premature ageing of somatically cloned mammals. Iubmb Life 48: 369-372.

• Pfannschmidt T, Nilsson A, Tullberg A, Link G, Allen JF (1999) Direct transcriptional control of the chloroplast genes psbA and psaAB adjusts photosynthesis to light energy distribution in plants. Iubmb Life 48: 271-276.

• Pfannschmidt T, Nilsson A, Allen JF (1999) Photosynthetic control of chloroplast gene expression. Nature 397: 625-628.

• Struglics A, Fredlund KM, Møller IM, Allen JF (1999) Phosphoproteins and protein kinase activities intrinsic to inner membranes of potato tuber mitochondria. Plant Cell Physiol. 40: 1271-1279.

• Allen JF (1998) Light, time and micro-organisms. In: Caddick MX, Baumberg S, Hodgson DA, Phillips-Jones MK (eds) Microbial responses to light and time. Cambridge University Press, Cambridge, pp 1-31.

• Dilly-Hartwig H, Allen JF, Paulsen H, Race HL (1998) Truncated recombinant light harvesting complex II proteins are substrates for a protein kinase associated with photosystem II core complexes. Febs Letters 435: 101-104.

• Galvis MLE, Allen JF, Håkansson G (1998) Protein synthesis by isolated pea mitochondria is dependent on the activity of respiratory complex II. Current Genetics 33: 320-329.

• Galvis MLE, Allen JF, Håkansson G (1998) Mitochondrial gene expression in pea is regulated by the activity of respiratory complex II. In: Møller IM, Gardeström P, Glimelius K, Glaser E (eds) Plant mitochondria: from gene to function. Backhuys, Leiden, pp 171-174.

• Race HL, Forsberg J, Hind G, Allen JF (1998) Photosystem II-associated protein kinase phosphorylates a novel 6.3 kDa protein which subsequently dissociates from photosystem II core complexes. In: Garab G (ed) Photosynthesis: mechanisms and effects. Kluwer, Dordrecht, pp 1859-1863.

• Silverstein TP, Allen JF (1998) A redox-controlled pH-dependent thylakoid protein kinase: Is plasto-quinol the activating ligand? Biophysical Journal 74: A79-A79.

• Struglics A, Fredlund KM, Moller IM, Allen JF (1998) Two subunits of the F0F1-ATPase are phosphorylated in the inner mitochondrial membrane. Biochemical and Biophysical Research Communications 243: 664-668.

• Allen JF, Matthijs HCP (1997) Complementary adaptations, photosynthesis and phytochrome. Trends in Plant Science 2: 41-43.

• Allen JF, Nilsson A (1997) Redox signalling and the structural basis of regulation of photosynthesis by protein phosphorylation. Physiologia Plantarum 100: 863-868.

• Nilsson A, Stys D, Drakenberg T, Spangfort MD, Forsen S, Allen JF (1997) Phosphorylation controls the three-dimensional structure of plant light harvesting complex II. Journal of Biological Chemistry 272: 18350-18357.

• Allen JF, Raven JA (1996) Free-radical-induced mutation vs redox regulation: Costs and benefits of genes in organelles. Journal of Molecular Evolution 42: 482-492.

• Allen JF (1996) Iron-sulphur proteins in redox control of transcription. Febs Letters 382: 220-221.

• Allen JF (1996) Redox control of gene expression involving iron-sulfur proteins. Change of oxidation-state or assembly disassembly of Fe-S clusters? Reply. Febs Letters 382: 220-221.

• Allen JF (1996) Separate sexes and the mitochondrial theory of ageing. Journal of Theoretical Biology 180: 135-140.

• Cheng L, Allen JF (1996) Studies on the phosphorylation and dephosphorylation reactions of thylakoid membrane proteins using synthetic peptides. In: Brodelius P, Møller IM (eds) Plant Membrane Biology. Oxford University Press, Oxford, pp 199-208.

• Stys D, Allen JF (1996) Specific blocking of complex formation in thylakoid membranes by peptide fragments of the light harvesting complex II. In: Brodelius P, Møller IM (eds) Plant Membrane Biology. Oxford University Press, Oxford, pp 209-218.

• Allen JF (1995) Origins of Photosynthesis. Nature 376: 26-26.

• Allen JF, Alexciev K, Håkansson G (1995) Photosynthesis - Regulation by Redox Signaling. Current Biology 5: 869-872.

• Allen JF (1995) Plant-Cell Biology Workshop on Thylakoid Protein Phosphorylation - Lund-University, Sweden, 27-29-March-1994. Physiologia Plantarum 93: 172-172.

• Allen CA, Håkansson G, Allen JF (1995) Redox Conditions Specify the Proteins Synthesized by Isolated-Chloroplasts and Mitochondria. Redox Report 1: 119-123.

• Allen JF (1995) Thylakoid Protein Phosphorylation, State-1-State-2 Transitions, and Photosystem Stoichiometry Adjustment - Redox Control at Multiple Levels of Gene Expression. Physiologia Plantarum 93: 196-205.

• Allen JF, Davies PN, Forsberg J, Håkansson G, Tullberg A (1995) Acid-labile, histidine phophoproteins in chloroplasts and mitochondria: possible candidates for redox sensor kinases. In: Mathis P (ed) Photosynthesis: from Light to Biosphere. Kluwer, Dordrecht, Vol. III, pp 699-702.

• Allen JF, Dubé SL, Davison PA (1995) Screening for mutants deficient in state transitions using time-resolved imaging spectroscopy of chlorophyll fluorescence. In: Mathis P (ed) Photosynthesis: from Light to Biosphere. Kluwer, Dordrecht, Vol. III, pp 679-682.

• Cheng LL, Stys D, Allen JF (1995) Effects of Synthetic Peptides on Thylakoid Phosphoprotein Phosphatase Reactions. Physiologia Plantarum 93: 173-178.

• Cheng L, Allen JF (1995) ATP-dependent effects on redox regulation of chloroplast protein synthesis. In: Mathis P (ed) Photosynthesis: from Light to Biosphere. Kluwer, Dordrecht, Vol. III, pp 579-582.

• Davies PN, Forsberg J, Allen JF (1995) Localisation of a thylakoid protein kinase and its relation to the 64 kDa LHC-II kinase and reverse redox titrator. In: Mathis P (ed) Photosynthesis: from Light to Biosphere. Kluwer, Dordrecht, Vol. V, pp 321-324.

• Håkansson G, Allen JF (1995) Histidine and Tyrosine Phosphorylation in Pea Mitochondria - Evidence for Protein Phosphorylation in Respiratory Redox Signaling. Febs Letters 372: 238-242.

• Liker E, Cheng L, Garab G, Allen JF (1995) Sensitivity of the phosphorylation of different phosphoproteins to Qo and Qi site inhibitors of the cytochrome b/f complex in chloroplast thylakoids. In: Mathis P (ed) Photosynthesis: from Light to Biosphere. Kluwer, Dordrecht, Vol. III, pp 85-89.

• Struglics A, Allen JF (1995) Redox dependent protein phosphorylation as a fundamental feature of bioenergetic membranes in cyanobacterial thylakoids, purple bacterial chromatophores and mitochondrial inner membranes. In: Mathis P (ed) Photosynthesis: from Light to Biosphere. Kluwer, Dordrecht, Vol. III, pp 413-416.

• Stys D, Stancek M, Cheng LL, Allen JF (1995) Complex-Formation in Plant Thylakoid Membranes - Competition Studies on Membrane Protein Interactions Using Synthetic Peptide-Fragments. Photosynthesis Research 44: 277-285.

• Stys D, Drakenberg T, Spangfort MD, Forsén S, Allen JF (1995) Structure and magnesium binding of peptide fragments of LHC II in its phosphorylated and unphosphorylated forms studied by multinuclear NMR. In: Mathis P (ed) Photosynthesis: from Light to Biosphere. Kluwer, Dordrecht, Vol. I, pp 127-130.

• Cheng LL, Spangfort MD, Allen JF (1994) Substrate-Specificity and Kinetics of Thylakoid Phosphoprotein Phosphatase Reactions. Biochimica Et Biophysica Acta-Bioenergetics 1188: 151-157.

• Nore BF, Harrison MA, Keen JN, Allen JF (1994) Partial-Purification of a Cyanobacterial Membrane Protein with Amino-Terminal Sequence Similarity to the N-Methylphenylalanine Pilins. Acta Chemica Scandinavica 48: 578-581.

• Silverstein TP, Cheng LL, Allen JF (1994) Redox Titration of Chloroplast Thylakoid Protein Phosphorylation - Evidence for a Single Redox-Controlled Kinase and a Redox-Independent Phosphatase. Biophysical Journal 66: A114-A114.

• Allen JF (1993) Control of Gene Expression by Redox Potential and the Requirement for Chloroplast and Mitochondrial Genomes. Journal of Theoretical Biology 165: 609-631.

• Allen JF (1993) Fotosyntes — evolutionens mirakulösa ingenjörskonst. In: Lundaforskare föreläser. pp 80-87.

• Allen JF (1993) Redox Control of Gene Expression and the Function of Chloroplast Genomes - an Hypothesis. Photosynthesis Research 36: 95-102.

• Allen JF (1993) Redox Control of Transcription - Sensors, Response Regulators, Activators and Repressors. Febs Letters 332: 203-207.

• Dube SL, Allen JF (1993) Characterization of State Transitions Invivo with the Ratio of Variable Fluorescence Measured at 2 Wavelengths. Plant Physiology 102: 144-144.

• Gong H, Nilsen S, Allen JF (1993) Photoinhibition of Photosynthesis Invivo - Involvement of Multiple Sites in a Photodamage Process under Co2-Free and O2-Free Conditions. Biochimica Et Biophysica Acta 1142: 115-122.

• Harrison MA, Allen JF (1993) Differential Phosphorylation of Individual LHC-II Polypeptides During Short-Term and Long-Term Acclimation to Light Regime in the Green-Alga Dunaliella-Salina. Biochimica Et Biophysica Acta 1141: 37-44.

• Silverstein T, Cheng LL, Allen JF (1993) Chloroplast Thylakoid Protein Phosphatase Reactions Are Redox-Independent and Kinetically Heterogeneous. Febs Letters 334: 101-105.

• Silverstein T, Cheng LL, Allen JF (1993) Redox Titration of Multiple Protein Phosphorylations in Pea Chloroplast Thylakoids. Biochimica Et Biophysica Acta 1183: 215-220.

• Allen JF (1992) How Does Protein Phosphorylation Regulate Photosynthesis. Trends in Biochemical Sciences 17: 12-17.

• Allen JF (1992) Molecular Structural Effects of Protein Phosphorylation in Regulation of Photosynthesis. Photosynthesis Research 34: 118-118.

• Allen JF (1992) Protein Phosphorylation and Lhcii Structure - Reply. Trends in Biochemical Sciences 17: 346-347.

• Allen JF (1992) Protein Phosphorylation in Regulation of Photosynthesis. Biochimica Et Biophysica Acta 1098: 275-335.

• Allen JF (1992) Molecular structural effects of protein phosphorylation in regulation of photosynthesis. In: Murata N (ed) Research in Photosynthesis. Kluwer, Dordrecht, pp 243-246.

• Gong H, Nilsen S, Allen JF (1992) A Photodamage Process Which Is Distinguishable from Photoinactivation Is Characterized as Inactivation of Multiple Sites. Photosynthesis Research 34: 232-232.

• Gong H, Nilsen S, Allen JF (1992) A photodamage process which is distinguishable from photoinactivation is characterized as inactivation of multiple sites. In: Murata N (ed) Research in Photosynthesis. Kluwer, Dordrecht, pp 549-552.

• Harrison MA, Allen JF (1992) Protein Phosphorylation and Mg-2+ Influence Light Harvesting and Electron Transport in Chloroplast Thylakoid Membrane Material Containing Only the Chlorophyll-a/B-Binding Light-Harvesting Complex of Photosystem-Ii and Photosystem-I. European Journal of Biochemistry 204: 1107-1114.

• Harrison MA, Melis A, Allen JF (1992) Restoration of Irradiance-Stressed Dunaliella-Salina (Green-Alga) to Physiological Growth-Conditions - Changes in Antenna Size and Composition of Photosystem-Ii. Biochimica Et Biophysica Acta 1100: 83-91.

• Nore BF, Harrison MA, Andersson BA, Allen JF (1992) Partial-Purification of the 15 Kda Phosphoprotein of Synechococcus 6301. Photosynthesis Research 34: 223-223.

• Nore BF, Harrison MA, Allen JF (1992) Purification of the 15 kDa phosphoprotein of Synechococcus 6301. In: Murata N (ed) Research in Photosynthesis. Kluwer, Dordrecht, pp 345-348.

• Harrison MA, Tsinoremas NF, Allen JF (1991) Cyanobacterial Thylakoid Membrane Proteins Are Reversibly Phosphorylated under Plastoquinone-Reducing Conditions Invitro. Febs Letters 282: 295-299.

• Harrison MA, Allen JF (1991) Light-Dependent Phosphorylation of Photosystem-Ii Polypeptides Maintains Electron Transport at High Light-Intensity - Separation from Effects of Phosphorylation of Lhc-Ii. Biochimica Et Biophysica Acta 1058: 289-296.

• Tsinoremas NF, Castets AM, Harrison MA, Allen JF, Demarsac NT (1991) Photosynthetic Electron Transport Controls Nitrogen Assimilation in Cyanobacteria by Means of Posttranslational Modification of the Glnb Gene Product. Proceedings of the National Academy of Sciences of the United States of America 88: 4565-4569.

• Allen JF (1990) How does protein phosphorylation control protein-protein interactions in the photosynthetic membrane? In: Baltscheffsky M (ed) Current Research in Photosynthesis. Kluwer, Dordrecht, pp 915-918.

• Allen JF, Harrison MA (1990) Phosphorylation of membrane proteins in control of excitation energy transfer. In: Drews G, Dawes EA (eds) Molecular biology of membrane-bound complexes in phototrophic bacteria. Plenum Press, New York, pp 291-298.

• Cox A, Allen JF (1990) Phosphoproteins in the purple photosynthetic bacterium Rhodospirillum rubrum. In: Baltscheffsky M (ed) Current Research in Photosynthesis. Kluwer, Dordrecht, pp 81-84.

• Harrison MA, Keen JN, Findlay JBC, Allen JF (1990) Modification of a Glnb-Like Gene Product by Photosynthetic Electron Transport in the Cyanobacterium-Synechococcus 6301. Febs Letters 264: 25-28.

• Harrison MA, Allen JF (1990) Characterisation and purification of polypeptides undergoing light-dependent phosphorylation in the cyanobacterium Synechococcus 6301. In: Baltscheffsky M (ed) Current Research in Photosynthesis. Kluwer, Dordrecht, pp 333-336.

• Mullineaux CW, Bittersmann E, Allen JF, Holzwarth AR (1990) Picosecond Time-Resolved Fluorescence Emission-Spectra Indicate Decreased Energy-Transfer from the Phycobilisome to Photosystem-Ii in Light-State-2 in the Cyanobacterium-Synechococcus 6301. Biochimica Et Biophysica Acta 1015: 231-242.

• Mullineaux CW, Allen JF (1990) State-1-State-2 Transitions in the Cyanobacterium Synechococcus 6301 Are Controlled by the Redox State of Electron Carriers between Photosystem-I and Photosystem-Ii. Photosynthesis Research 23: 297-311.

• Smith BM, Morrissey PJ, Guenther JE, Nemson JA, Harrison MA, Allen JF, Melis A (1990) Response of the Photosynthetic Apparatus in Dunaliella-Salina (Green-Algae) to Irradiance Stress. Plant Physiology 93: 1433-1440.

• Tsinoremas NF, Hubbard JAM, Evans MCW, Allen JF (1990) P-700 photooxidation in state 1 and state 2 in cyanobacteria upon flash illumination with phycobilin- and chlorophyll-absorbed light. In: Baltscheffsky M (ed) Current Research in Photosynthesis. Kluwer, Dordrecht, pp 919-922.

• Allen JF (1989) Harvesting light in a changing environment. In: The University of Leeds Reporter.

• Allen JF, Harrison MA, Holmes NG (1989) Protein Phosphorylation and Control of Excitation-Energy Transfer in Photosynthetic Purple Bacteria and Cyanobacteria. Biochimie 71: 1021-1028.

• Allen JF, Mullineaux CW, Sanders CE, Melis A (1989) State Transitions, Photosystem Stoichiometry Adjustment and Non-Photochemical Quenching in Cyanobacterial Cells Acclimated to Light Absorbed by Photosystem-I or Photosystem-Ii. Photosynthesis Research 22: 157-166.

• Allen JF (1989) Unravelling a green mystery. In: The Independent. London.

• Melis A, Mullineaux CW, Allen JF (1989) Acclimation of the Photosynthetic Apparatus to Photosystem-I or Photosystem-Ii Light - Evidence from Quantum Yield Measurements and Fluorescence Spectroscopy of Cyanobacterial Cells. Zeitschrift Fur Naturforschung C-a Journal of Biosciences 44: 109-118.

• Sanders CE, Melis A, Allen JF (1989) Invivo Phosphorylation of Proteins in the Cyanobacterium Synechococcus 6301 after Chromatic Acclimation to Photosystem-I or Photosystem-Ii Light. Biochimica Et Biophysica Acta 976: 168-172.

• Tsinoremas NF, Hubbard JAM, Evans MCW, Allen JF (1989) P-700 Photooxidation in State-1 and State-2 in Cyanobacteria Upon Flash Illumination with Phycobilin-Absorbed and Chlorophyll-Absorbed Light. Febs Letters 256: 106-110.

• Allen JF, Melis A (1988) The Rate of P-700 Photooxidation under Continuous Illumination Is Independent of State-1 State-2 Transitions in the Green-Alga Scenedesmus-Obliquus. Biochimica Et Biophysica Acta 933: 95-106.

• Holmes NG, Allen JF (1988) Protein Phosphorylation in Chromatophores from Rhodospirillum-Rubrum. Biochimica Et Biophysica Acta 935: 72-78.

• Mullineaux CW, Allen JF (1988) Fluorescence Induction Transients Indicate Dissociation of Photosystem-Ii from the Phycobilisome During the State-2 Transition in the Cyanobacterium Synechococcus 6301. Biochimica Et Biophysica Acta 934: 96-107.

• Sanders CE, Allen JF (1988) Effects of Divalent-Cations on 77-K Fluorescence Emission and on Membrane Protein Phosphorylation in Isolated Thylakoids of the Cyanobacterium Synechococcus 6301. Biochimica Et Biophysica Acta 934: 87-95.

• Allen JF, Harrison MA, Holmes NG, Mullineaux CW, Sanders CE (1987) Regulation of photosynthetic unit function by protein phosphorylation. In: Biggins J (ed) Progress in Photosynthesis Research. Nijhoff, Dordrecht, pp 757-760.

• Holmes NG, Allen JF (1987) Protein phosphorylation: a mechanism for control of excitation energy distribution in purple photosynthetic bacteria. In: Biggins J (ed) Progress in Photosynthesis Research. Nijhoff, Dordrecht, pp 49-52.

• Mullineaux CW, Allen JF (1987) State 1-state 2 transitions in Synechococcus 6301 are influenced by respiratory electron flow: evidence for the control of excitation energy distribution by the redox level of plastoquinone in cyanobacteria. In: Biggins J (ed) Progress in Photosynthesis Research. Nijhoff, Dordrecht, pp 765-768.

• Sanders CE, Allen JF (1987) The 18.5 kDa phosphoprotein of Synechococcus 6301: a component of the phycobilisome. In: Biggins J (ed) Progress in Photosynthesis Research. Nijhoff, Dordrecht, pp 761-764.

• Williams RS, Allen JF, Brain APR, Ellis RJ (1987) Effect of Mg-2+ on Excitation-Energy Transfer between Lhc-Ii and Lhc-I in a Chlorophyll-Protein Complex. Febs Letters 225: 59-66.

• Williams WP, Allen JF (1987) State-1/State-2 Changes in Higher-Plants and Algae. Photosynthesis Research 13: 19-45.

• Allen JF, Findlay JBC (1986) Amino-Acid-Composition of the 9 Kda Phosphoprotein of Pea Thylakoids. Biochemical and Biophysical Research Communications 138: 146-152.

• Allen JF, Holmes NG (1986) A General Model for Regulation of Photosynthetic Unit Function by Protein Phosphorylation. Febs Letters 202: 175-181.

• Allen JF, Holmes NG, Mullineaux CW, Sanders CE (1986) More on Thylakoid Membrane Stacking. Trends in Biochemical Sciences 11: 320-320.

• Allen JF, Holmes NG (1986) Electron transport and redox titration. In: Hipkins MF, Baker NR (eds) Photosynthesis: energy transduction: a practical approach. IRL Press, Oxford, pp 103-141.

• Holmes NG, Sanders CE, Allen JF (1986) Membrane Protein Phosphorylation in the Purple Photosynthetic Bacterium Rhodopseudomonas-Sphaeroides. Biochemical Society Transactions 14: 67-68.

• Holmes NG, Allen JF (1986) Protein Phosphorylation as a Control for Excitation-Energy Transfer in Rhodospirillum-Rubrum. Febs Letters 200: 144-148.

• Mullineaux CW, Boult M, Sanders CE, Allen JF (1986) Fluorescence Induction Transients Indicate Altered Absorption Cross-Section During Light-State Transitions in the Cyanobacterium Synechococcus 6301. Biochimica Et Biophysica Acta 851: 147-150.

• Mullineaux CW, Allen JF (1986) The State-2 Transition in the Cyanobacterium Synechococcus-6301 Can Be Driven by Respiratory Electron Flow into the Plastoquinone Pool. Febs Letters 205: 155-160.

• Sanders CE, Holmes NG, Allen JF (1986) Membrane Protein Phosphorylation in the Cyanobacterium Synechococcus 6301. Biochemical Society Transactions 14: 66-67.

• Allen JF, Sanders CE, Holmes NG (1985) Correlation of Membrane Protein Phosphorylation with Excitation-Energy Distribution in the Cyanobacterium Synechococcus-6301. Febs Letters 193: 271-275.

• Allen JF (1984) Photosynthesis and Phosphorylation of Light-Harvesting Chlorophyll-a/B-Protein in Intact Chloroplasts - Effects of Uncouplers. Febs Letters 166: 237-244.

• Allen JF (1984) Protein Phosphorylation and Optimal Production of Atp in Photosynthesis. Biochemical Society Transactions 12: 774-775.

• Allen JF (1983) Protein Phosphorylation - Carburetor of Photosynthesis. Trends in Biochemical Sciences 8: 369-373.

• Allen JF (1983) Regulation of Photosynthetic Phosphorylation. Crc Critical Reviews in Plant Sciences 1: 1-22.

• Saito K, Williams WP, Allen JF, Bennett J (1983) Comparison of ATP-induced and state 1-state 2 related changes in excitation energy distribution in Chlorella vulgaris. Biochimica Et Biophysica Acta 724: 94-103.

• Telfer A, Allen JF, Barber J, Bennett J (1983) Thylakoid Protein Phosphorylation During State-1-State-2 Transitions in Osmotically Shocked Pea-Chloroplasts. Biochimica Et Biophysica Acta 722: 176-181.

• Allen JF (1981) Oxygen - a physiological electron acceptor in photosynthesis? In: Smith H (ed) Commentaries in Plant Science. Pergamon, Oxford, pp 97-107.

• Allen JF, Bennett J (1981) Photosynthetic Protein Phosphorylation in Intact Chloroplasts - Inhibition by Dcmu and by the Onset of Co2 Fixation. Febs Letters 123: 67-70.

• Allen JF, Bennett J, Steinback KE, Arntzen CJ (1981) Chloroplast Protein Phosphorylation Couples Plastoquinone Redox State to Distribution of Excitation-Energy between Photosystems. Nature 291: 25-29.

• Allen JF, Horton P (1981) Chloroplast Protein Phosphorylation and Chlorophyll Fluorescence Quenching - Activation by Tetramethyl-Para-Hydroquinone, an Electron-Donor to Plastoquinone. Biochimica Et Biophysica Acta 638: 290-295.

• Bennett J, Allen JF (1981) Thylakoid protein phosphorylation: a regulatory role in photosynthesis. In: Akoyunoglou G (ed) Photosynthesis. Balaban International Science Services, Philadelphia.

• Horton P, Allen JF, Black MT, Bennett J (1981) Regulation of Phosphorylation of Chloroplast Membrane Polypeptides by the Redox State of Plastoquinone. Febs Letters 125: 193-196.

• Bennett J, Allen JF, Steinback KE, Arntzen CJ (1980) Phosphorylation of polypeptides of the light-harvesting Chl a/b complex. Abstracts of the Fifth International Congress on Photosynthesis, Halkidiki, Greece, p 54.

• Allen JF, Whatley FR (1978) Effects of Inhibitors of Catalase on Photosynthesis and on Catalase Activity in Unwashed Preparations of Intact Chloroplasts. Plant Physiology 61: 957-960.

• Allen JF (1978) Induction of a Mehler Reaction in Chloroplast Preparations by Flavin Mono-Nucleotide - Effects on Photosynthesis by Intact Chloroplasts. Plant Science Letters 12: 151-159.

• Allen JF (1978) Induction of a Mehler Reaction in Chloroplast Preparations by Methyl Viologen and by Ferredoxin - Effects on Photosynthesis by Intact Chloroplasts. Plant Science Letters 12: 161-167.

• Allen JF (1977) Effects of Washing and Osmotic Shock on Catalase Activity of Intact Chloroplast Preparations. Febs Letters 84: 221-224.

• Allen JF (1977) Oxygen - a physiological electron acceptor in photosynthesis? Current Advances in Plant Science 9: 459-469.

• Allen JF (1977) Superoxide and photosynthetic reduction of oxygen. In: Michelson AM, McCord JM, Fridovich I (eds) Superoxide and Superoxide Dismutases. Academic Press, London and New York, pp 417-436.

• Allen JF (1975) 2-Step Mechanism for Photosynthetic Reduction of Oxygen by Ferredoxin. Biochemical and Biophysical Research Communications 66: 36-43.

• Allen JF (1975) Oxygen Reduction and Optimum Production of Atp in Photosynthesis. Nature 256: 599-600.

• Allen JF, Hall DO (1974) Relationship of Oxygen-Uptake to Electron Transport in Photosystem-I of Isolated-Chloroplasts - Role of Superoxide and Ascorbate. Biochemical and Biophysical Research Communications 58: 579-585.

• Allen JF, Hall DO (1973) Superoxide Reduction as a Mechanism of Ascorbate-Stimulated Oxygen-Uptake by Isolated Chloroplasts. Biochemical and Biophysical Research Communications 52: 856-862.

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